sbmlsim.test.fit.test_fit

Module Contents

Functions

test_fit_settings(fit_kwargs)

Test various arguments to optimization problem.

test_optimization_analysis(tmp_path)

test_loss_function(loss_function)

Test the various loss functions.

test_fit_lsq_serial()

Test serial least square fit.

test_fit_de_serial()

Test serial differential evolution fit.

test_fit_lsq_parallel()

Test parallel least square fit.

test_fit_de_parallel()

Test parallel differential evolution fit.

Attributes

fit_kwargs_testdata

fit_kwargs_default

sbmlsim.test.fit.test_fit.fit_kwargs_testdata = [][source]
sbmlsim.test.fit.test_fit.test_fit_settings(fit_kwargs)[source]

Test various arguments to optimization problem.

Parameters

fit_kwargs (Dict[str, Any]) –

Return type

None

sbmlsim.test.fit.test_fit.fit_kwargs_default[source]
sbmlsim.test.fit.test_fit.test_optimization_analysis(tmp_path)[source]
sbmlsim.test.fit.test_fit.test_loss_function(loss_function)[source]

Test the various loss functions.

Parameters

loss_function (sbmlsim.fit.options.LossFunctionType) –

Return type

None

sbmlsim.test.fit.test_fit.test_fit_lsq_serial()[source]

Test serial least square fit.

Return type

None

sbmlsim.test.fit.test_fit.test_fit_de_serial()[source]

Test serial differential evolution fit.

Return type

None

sbmlsim.test.fit.test_fit.test_fit_lsq_parallel()[source]

Test parallel least square fit.

Return type

None

sbmlsim.test.fit.test_fit.test_fit_de_parallel()[source]

Test parallel differential evolution fit.