Overview¶
Mission: make SBML simulations simple
The idea of sbmlsim is to provide a simple abstraction layer for running simulations with SBML models in python and simplify common tasks occuring in modeling.
Simplicity
- make it easy to encode simulation experiments with a focus
on numerical ODE simulations
Simulation
timecourse simulations
combined simulation experiments (combination of changes)
parameter scans
parameter sensitivity analysis
Reproducibility
A simplified exchange language based on JSON is part of sbmlsim
COMBINE standards are used whenever possible.
Visualization
plots and reports
Parallelization
simple parallelization of multiple simulation, collection of results
Parameter fitting - helpers for running parameter fitting experiments
Unit support - full support for units on model simulations