sbmlsim.simulator

Package for simulator.

Submodules

• sbmlsim.simulator.rr_simulator_abstract
• sbmlsim.simulator.rr_simulator_ray
• sbmlsim.simulator.rr_simulator_serial
• sbmlsim.simulator.rr_worker

Package Contents

Classes

SimulatorSerialRR

Serial simulator using a single core.

class sbmlsim.simulator.SimulatorSerialRR

Bases: sbmlsim.simulator.rr_simulator_abstract.SimulatorAbstractRR

Serial simulator using a single core.

static from_sbml(sbml_path)

Set model from SBML.

Parameters:

sbml_path (pathlib.Path) –

Return type:

SimulatorSerialRR

set_model(model_state)

Set model from state.

Parameters:

model_state (bytes) –

Return type:

None

set_timecourse_selections(selections=None)

Set timecourse selections.

Parameters:

selections (Optional[Iterator[str]]) –

Return type:

None

set_integrator_settings(**kwargs)

Set integrator settings.

_run_timecourses(simulations)

Execute timecourse simulations.

Parameters:

simulations (List[sbmlsim.simulation.TimecourseSim]) –

Return type:

List[pandas.DataFrame]