sbmlsim.simulator.rr_simulator_serial

Serial simulator.

Executing simulations with single roadrunner instance on a single core.

Module Contents

Classes

SimulatorSerialRR

Serial simulator using a single core.

Attributes

logger

sbmlsim.simulator.rr_simulator_serial.logger[source]
class sbmlsim.simulator.rr_simulator_serial.SimulatorSerialRR[source]

Bases: sbmlsim.simulator.rr_simulator_abstract.SimulatorAbstractRR

Serial simulator using a single core.

static from_sbml(sbml_path)[source]

Set model from SBML.

Parameters

sbml_path (pathlib.Path) –

Return type

SimulatorSerialRR

set_model(model_state)[source]

Set model from state.

Parameters

model_state (str) –

Return type

None

set_timecourse_selections(selections=None)[source]

Set timecourse selections.

Parameters

selections (Optional[Iterator[str]]) –

Return type

None

set_integrator_settings(**kwargs)[source]

Set integrator settings.

_run_timecourses(simulations)[source]

Execute timecourse simulations.

Parameters

simulations (List[sbmlsim.simulation.TimecourseSim]) –

Return type

List[pandas.DataFrame]