Python Module Index

a | b | c | d | s | z


	a
	`app2sim`
	`app2sim.sedml`
	`asedml3repeat`
	`asedml3repeat.sedml`
	`asedmlComplex`
	`asedmlComplex.sedml`

	b
	`BioModel1_repressor_activator_oscillations`
	`BioModel1_repressor_activator_oscillations.sedml`

	c
	`connect_ray`
	`create_omex`

	d
	`download_omex`

	s
	`sbmlsim`
	`sbmlsim._deprecated`
	`sbmlsim._deprecated.pk`
	`sbmlsim._deprecated.pk.pkpd`
	`sbmlsim.combine`
	`sbmlsim.combine.mathml`
	`sbmlsim.combine.omex`
	`sbmlsim.combine.sedml`
	`sbmlsim.combine.sedml.data`
	`sbmlsim.combine.sedml.io`
	`sbmlsim.combine.sedml.kisao`
	`sbmlsim.combine.sedml.numl`
	`sbmlsim.combine.sedml.parser`
	`sbmlsim.combine.sedml.task`
	`sbmlsim.combine.sedml.tesedml`
	`sbmlsim.data`
	`sbmlsim.diff`
	`sbmlsim.examples`
	`sbmlsim.examples.example_model_change`
	`sbmlsim.examples.example_parallel`
	`sbmlsim.examples.example_scan`
	`sbmlsim.examples.example_sensitivity`
	`sbmlsim.examples.example_timecourse`
	`sbmlsim.examples.example_units`
	`sbmlsim.examples.experiments`
	`sbmlsim.examples.experiments.covid`
	`sbmlsim.examples.experiments.covid.experiments`
	`sbmlsim.examples.experiments.covid.experiments.bertozzi2020`
	`sbmlsim.examples.experiments.covid.experiments.carcione2020`
	`sbmlsim.examples.experiments.covid.experiments.cuadros2020`
	`sbmlsim.examples.experiments.covid.simulate`
	`sbmlsim.examples.experiments.demo`
	`sbmlsim.examples.experiments.demo.demo`
	`sbmlsim.examples.experiments.glucose`
	`sbmlsim.examples.experiments.glucose.experiments`
	`sbmlsim.examples.experiments.glucose.experiments.dose_response`
	`sbmlsim.examples.experiments.glucose.glucose`
	`sbmlsim.examples.experiments.initial_assignment`
	`sbmlsim.examples.experiments.initial_assignment.initial_assignment`
	`sbmlsim.examples.experiments.initial_assignment.initial_assignment_rr`
	`sbmlsim.examples.experiments.midazolam`
	`sbmlsim.examples.experiments.midazolam.experiments`
	`sbmlsim.examples.experiments.midazolam.experiments.kupferschmidt1995`
	`sbmlsim.examples.experiments.midazolam.experiments.mandema1992`
	`sbmlsim.examples.experiments.midazolam.fitting_example`
	`sbmlsim.examples.experiments.midazolam.fitting_problems`
	`sbmlsim.examples.experiments.midazolam.simulate`
	`sbmlsim.examples.experiments.repressilator`
	`sbmlsim.examples.experiments.repressilator.repressilator`
	`sbmlsim.examples.sedml`
	`sbmlsim.examples.sedml.execute_omex`
	`sbmlsim.examples.sedml.execute_sedml`
	`sbmlsim.experiment`
	`sbmlsim.experiment.experiment`
	`sbmlsim.experiment.runner`
	`sbmlsim.fit`
	`sbmlsim.fit.analysis`
	`sbmlsim.fit.objects`
	`sbmlsim.fit.optimization`
	`sbmlsim.fit.options`
	`sbmlsim.fit.result`
	`sbmlsim.fit.runner`
	`sbmlsim.fit.sampling`
	`sbmlsim.model`
	`sbmlsim.model.model`
	`sbmlsim.model.model_change`
	`sbmlsim.model.model_resources`
	`sbmlsim.model.model_roadrunner`
	`sbmlsim.multiprocessing`
	`sbmlsim.multiprocessing.multiprocessing_example`
	`sbmlsim.multiprocessing.ray_example`
	`sbmlsim.plot`
	`sbmlsim.plot.plotting`
	`sbmlsim.plot.plotting_altair`
	`sbmlsim.plot.plotting_matplotlib`
	`sbmlsim.plot.plotting_plotly`
	`sbmlsim.report`
	`sbmlsim.report.experiment_report`
	`sbmlsim.result`
	`sbmlsim.result.datagenerator`
	`sbmlsim.result.datagenerator_example`
	`sbmlsim.result.xresult`
	`sbmlsim.serialization`
	`sbmlsim.simulation`
	`sbmlsim.simulation.range`
	`sbmlsim.simulation.scan`
	`sbmlsim.simulation.sensitivity`
	`sbmlsim.simulation.simulation`
	`sbmlsim.simulation.timecourse`
	`sbmlsim.simulator`
	`sbmlsim.simulator.simulation`
	`sbmlsim.simulator.simulation_ray`
	`sbmlsim.simulator.simulation_serial`
	`sbmlsim.task`
	`sbmlsim.task.task`
	`sbmlsim.test`
	`sbmlsim.test.combine`
	`sbmlsim.test.combine.sedml`
	`sbmlsim.test.combine.sedml.test_data`
	`sbmlsim.test.combine.sedml.test_examples`
	`sbmlsim.test.combine.sedml.test_io`
	`sbmlsim.test.combine.sedml.test_numl`
	`sbmlsim.test.combine.test_omex`
	`sbmlsim.test.data`
	`sbmlsim.test.data.data`
	`sbmlsim.test.data.data.data_creator`
	`sbmlsim.test.data.diff`
	`sbmlsim.test.data.diff.simulate_examples`
	`sbmlsim.test.data.sed-ml`
	`sbmlsim.test.data.sed-ml.cellml`
	`sbmlsim.test.experiment`
	`sbmlsim.test.experiment.test_experiment_examples`
	`sbmlsim.test.fit`
	`sbmlsim.test.fit.test_fit`
	`sbmlsim.test.fit.test_fitting_example`
	`sbmlsim.test.fit.test_objects`
	`sbmlsim.test.fit.test_optimization_result`
	`sbmlsim.test.fit.test_sampling`
	`sbmlsim.test.models`
	`sbmlsim.test.models.test_biomodels`
	`sbmlsim.test.models.test_model`
	`sbmlsim.test.plot`
	`sbmlsim.test.plot.test_plotting`
	`sbmlsim.test.plot.test_plotting_matplotlib`
	`sbmlsim.test.processing`
	`sbmlsim.test.processing.test_mathml`
	`sbmlsim.test.result`
	`sbmlsim.test.result.test_datagenerator`
	`sbmlsim.test.result.test_results`
	`sbmlsim.test.test_data`
	`sbmlsim.test.test_diff`
	`sbmlsim.test.test_model_change`
	`sbmlsim.test.test_parallel`
	`sbmlsim.test.test_reports`
	`sbmlsim.test.test_scan`
	`sbmlsim.test.test_sensitivity`
	`sbmlsim.test.test_simulation`
	`sbmlsim.test.test_simulator`
	`sbmlsim.test.test_timecourse`
	`sbmlsim.test.test_units`
	`sbmlsim.test.test_utils`
	`sbmlsim.units`
	`sbmlsim.utils`
	`sbmlsim.utils_logging`

	z
	`zip_archives`