sbmlsim.examples.experiments.midazolam.experiments.kupferschmidt1995

Module Contents

Classes

Kupferschmidt1995

Base class for all GlucoseSimulationExperiments.
class sbmlsim.examples.experiments.midazolam.experiments.kupferschmidt1995.Kupferschmidt1995(sid=None, base_path=None, data_path=None, ureg=None, **kwargs)[source]

Bases: sbmlsim.examples.experiments.midazolam.experiments.MidazolamSimulationExperiment

Base class for all GlucoseSimulationExperiments.

Parameters

  • sid (str) –

  • base_path (pathlib.Path) –

  • data_path (pathlib.Path) –

  • ureg (sbmlsim.units.UnitRegistry) –

datasets(self)[source]

Define dataset definitions (experimental data).

The child classes fill out the information.

Return type

Dict[str, sbmlsim.data.DataSet]

simulations(self)[source]

Define simulation definitions.

The child classes fill out the information.

Return type

Dict[str, sbmlsim.simulation.TimecourseSim]

simulations_mid(self)[source]

Kupferschmidt1995

  • midazolam, iv, 5 [mg]

  • midazolam, po, 15 [mg]

  • grapefruit juice, po, 200 [mg], -60min and -15min

Return type

Dict[str, sbmlsim.simulation.TimecourseSim]

fit_mappings(self)[source]

Define fit mappings.

Mapping reference data on observables. Used for the optimization of parameters. The child classes fill out the information.

Return type

Dict[str, sbmlsim.fit.FitMapping]

figures(self)[source]

Figure definition.

Selections accessed in figures and analyses must be registered beforehand via datagenerators.

Most figures do not require access to concrete data, but only abstract data concepts.

Return type

Dict[str, sbmlsim.plot.Figure]

figure_mid(self)[source]