`sbmlsim.simulation.kisaos`¶

Working with the KISAO ontology.

Module Contents¶

`is_supported_algorithm_for_simulation_type`(kisao, sim_type)	Check Algorithm Kisao Id is supported for simulation.
`integrator_from_kisao`(kisao)	Get RoadRunner integrator name for algorithm KisaoID.
`algorithm_parameter_to_parameter_key`(par)	Resolve the mapping between parameter keys and roadrunner integrator keys.

`logger`
`KISAOS_CVODE`
`KISAOS_RK4`
`KISAOS_RK45`
`KISAOS_LSODA`
`KISAOS_GILLESPIE`
`KISAOS_NLEQ`
`KISAOS_STEADYSTATE`
`KISAOS_UNIFORMTIMECOURSE`
`KISAOS_ONESTEP`
`KISAOS_ALGORITHMPARAMETERS`

sbmlsim.simulation.kisaos.KISAOS_CVODE = ['KISAO:0000019', 'KISAO:0000433', 'KISAO:0000407', 'KISAO:0000099', 'KISAO:0000035',...[source]¶

sbmlsim.simulation.kisaos.KISAOS_RK4 = ['KISAO:0000032', 'KISAO:0000064'][source]¶

sbmlsim.simulation.kisaos.KISAOS_GILLESPIE = ['KISAO:0000241', 'KISAO:0000029', 'KISAO:0000319', 'KISAO:0000274', 'KISAO:0000333',...[source]¶

sbmlsim.simulation.kisaos.KISAOS_NLEQ = ['KISAO:0000099', 'KISAO:0000274', 'KISAO:0000282', 'KISAO:0000283', 'KISAO:0000355',...[source]¶

sbmlsim.simulation.kisaos.is_supported_algorithm_for_simulation_type(kisao, sim_type)[source]¶

Check Algorithm Kisao Id is supported for simulation.

sbmlsim.simulation.kisaos.integrator_from_kisao(kisao)[source]¶

Get RoadRunner integrator name for algorithm KisaoID.

sbmlsim.simulation.kisaos.algorithm_parameter_to_parameter_key(par)[source]¶: Resolve the mapping between parameter keys and roadrunner integrator keys.