sbmlsim.combine.sedml.task

Module Contents

Classes

TaskNode	Tree implementation of task tree.
Stack	Stack implementation for nodes.
TaskTree
Test

Attributes

logger

sbmlsim.combine.sedml.task.logger

class sbmlsim.combine.sedml.task.TaskNode(task, depth)

Bases: object

Tree implementation of task tree.

Parameters:

• task (libsedml.SedAbstractTask) –

• depth (int) –

add_child(obj)

is_leaf()

__str__()

Return str(self).

Return type:

str

info()

Return type:

str

__iter__()

Depth-first iterator which yields TaskNodes.

__repr__()

Return repr(self).

Return type:

str

class sbmlsim.combine.sedml.task.Stack

Bases: object

Stack implementation for nodes.

isEmpty()

push(item)

pop()

peek()

size()

__str__()

Return str(self).

class sbmlsim.combine.sedml.task.TaskTree

Bases: object

static from_sedml_task(sed_task, root_task)

Creates task tree for given SedTask

The task tree is used to resolve the order of all simulations.

Parameters:

• sed_task (libsedml.SedDocument) –

• root_task (libsedml.SedAbstractTask) –

Return type:

TaskNode

static get_ordered_subtasks(repeated_task)

Ordered list of subtasks for repeated task.

Parameters:

repeated_task (libsedml.SedRepeatedTask) –

Return type:

List[libsedml.SedSubTask]

class sbmlsim.combine.sedml.task.Test

Bases: object

static simpleTaskToPython(doc, node)

Creates the simulation python code for a given taskNode.

The taskNodes are required to handle the relationships between RepeatedTasks, SubTasks and SimpleTasks (Task).

Parameters:

• doc (SEDDocument) – sedml document

• node (TaskNode) – taskNode of the current task

Returns:

Return type:

static repeatedTaskToPython(doc, node)

Create python for RepeatedTask.

Must create - the ranges (Ranges) - apply all changes (SetValues)

static uniformRangeToPython(r)

Create python lines for uniform range. :param r: :type r: :return: :rtype:

static vectorRangeToPython(r)