sbmlsim.combine.sedml.runner

Module with helpers to execute SED-ML files and COMBINE archives.

Module Contents

Functions

sedmltojson(sedml_path)

Convert SED-ML to JSON file.

execute_sedml(path, working_dir, output_path)

Execute the given SED-ML in the working directory.

sbmlsim.combine.sedml.runner.sedmltojson(sedml_path)[source]

Convert SED-ML to JSON file.

Parameters

sedml_path (pathlib.Path) –

Return type

None

sbmlsim.combine.sedml.runner.execute_sedml(path, working_dir, output_path)[source]

Execute the given SED-ML in the working directory.

Parameters
  • path (pathlib.Path) – path to SED-ML file or OMEX archive.

  • working_dir (pathlib.Path) – directory for execution and resources

  • output_path (pathlib.Path) –

Returns

Return type

None